GgaEX6005015 @ galGal4
Exon Skipping
Gene
ENSGALG00000016727 | JADE3
Description
jade family PHD finger 3 [Source:HGNC Symbol;Acc:HGNC:22982]
Coordinates
chr1:129501973-129506894:-
Coord C1 exon
chr1:129506704-129506894
Coord A exon
chr1:129504539-129504750
Coord C2 exon
chr1:129501973-129502140
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTCCCTATTCTGCGTTGTAGGAT
3' ss Score
9.32
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGTTGTCGCAGAAAAGGTGAAAGAAGTACTGTATACACGACCCAGGAAATATATCCACTGTTCCAGCCAAGAGCCTACAGAACCAGGTTACATCAACATTTTGGAATTGGCAGAATCTGTGTGTCGCTATGACTTGGATGATATGGACATATTTTGGCTCCAGGAACTAAATGAAGAGCTTACTGAAATGG
Seq A exon
GATGCGGGCCCCTGGATGAAAACACAATGGAAAAAACTATTGAAGTGCTGGAGAGACACTGTCATGAGAATATGAATCATGCTATTGAGACCGAAGAAGGTCTGGGTATAGAGTATGATGAAGATGTCATCTGTGATGTGTGCCGGTCTCCTGACAGTGAAGATGGGAACGATATGGTGTTCTGTGACAAGTGTAATATCTGCGTCCATCAG
Seq C2 exon
GCATGCTATGGAATCTTGAAAGTCCCCGAAGGGAGCTGGCTGTGCCGCACCTGTGTTCTGGGGATACATCCTCAGTGCCTCCTGTGTCCGAAACGAGGAGGTGCCATGAAAGCCACCAGGACAGGGACCAAGTGGGCACATGTGAGCTGTGCTCTCTGGATTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016727-'14-10,'14-8,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(43.0=100)
A:
PF105134=EPL1=PD(12.8=26.8),PF0013017=C1_1=PU(75.9=62.0),PF138311=PHD_2=PU(42.9=21.1)
C2:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGAGCCTACAGAACCA
R:
TGGAATCCAGAGAGCACAGCT
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]