MmuEX6043805 @ mm9
Exon Skipping
Gene
ENSMUSG00000037315 | Phf16
Description
PHD finger protein 16 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20066828-20076719:+
Coord C1 exon
chrX:20066828-20067018
Coord A exon
chrX:20071283-20071494
Coord C2 exon
chrX:20076552-20076719
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTTTATATTTTTCTGTGCAGGTT
3' ss Score
11
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GATTATATCTGAAAAAGTAAAGGAGATGCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCAAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGATATCTTTTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
Seq A exon
GTTATGGCCCAATTGATGAGACTCTTATGGAAAAGACAATAGAAGTTCTGGAACGCCACTGCCATGAAAATATGAACCATGCTATTGAAACAGTGGAAGGGCTAGGAATAGAATATGATGAAGATGTGATCTGTGATGTGTGCCGGTCTCCAGACAGTGAAGAAGGGAATGATATGGTATTCTGTGATAAGTGTAACGTCTGTGTACATCAG
Seq C2 exon
GCTTGCTATGGCATTCTCAAGATTCCAGAAGGTAGTTGGCTGTGCCGCTCCTGTGTCCTGGGCATTTATCCACAGTGTGTTTTATGTCCTAAGAAAGGTGGAGCCATGAAGACCACCAGAACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTGTGGATTCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(42.4=100),PF107894=Phage_RpbA=PU(31.0=33.8)
A:
PF105134=EPL1=PD(12.6=26.8),PF107894=Phage_RpbA=PD(67.6=67.6),PF0013017=C1_1=PU(71.4=49.3),PF138311=PHD_2=PU(42.9=21.1)
C2:
PF0013017=C1_1=PD(24.5=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATATCCGTTGCTCCAGCCCA
R:
CACAGCTGACATGAGCCCATT
Band lengths:
293-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: