DreEX6023328 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40395683-40398677:+
Coord C1 exon
chr6:40395683-40395844
Coord A exon
chr6:40395945-40396058
Coord C2 exon
chr6:40398516-40398677
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGGTATTTTTGTGATGCAGGTG
3' ss Score
7.28
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAGTGTTTAGATCTCCAGGGTCAGTTTATTGGACCTTCGTGTGGACATCACGGTCCCTATACCCCTGATGTGCTCTTCTGGTCATCCATCTTGTTCTTTGGTACCTTTTTAATGTCTAGCTTCCTGAAACAGTTTAAGGCTAGCAGATACTTTCCAACACGG
Seq A exon
GTGCGGTCAATGATCAGTGATTTTGCGGTGTTCCTCACCATTGTTTTCATGGTCCTGATTGATTATATCATTGGAGTTCCATCCCAAAAATTACAAGTCCCCAGCAAGTTCAAG
Seq C2 exon
CCTACACGTGATGATCGTGGTTGGGTGATGAACCCAATTGGGCGCAACCCATGGTGGACAGTACTGGCTGCCTTAATACCAGCTCTCCTCTGCACCATTCTCATCTTCATGGACCAACAGATCACTGCAGTCATTATAAACCGCAAAGAGCACAAACTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(7.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCACGGTCCCTATACCCC
R:
ACTGCAGTGATCTGTTGGTCC
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]