MmuEX6056559 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100800480-100806411:+
Coord C1 exon
chr15:100800480-100800641
Coord A exon
chr15:100803235-100803348
Coord C2 exon
chr15:100806250-100806411
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCGATTGTTTGCCATGCCAGGTC
3' ss Score
5.78
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAATGCCAGGAGATGCACGGGGAGTTCATGGGATCTGCCTGCGGTCACCACGGACCCTACACGCCCGACGTGCTCTTTTGGTCCTGCATTCTGTTCTTCGCCACCTTCATCGTCTCCAGCACCTTAAAGACATTTAAGACAAGCCGCTACTTCCCGACCAGG
Seq A exon
GTCCGCTCCATGGTGAGTGACTTCGCCGTGTTCCTCACCATCTTCACCATGGTGGTCCTTGACTTTCTGATTGGCGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTTCAAG
Seq C2 exon
CCAACAAGGGACGATCGAGGATGGTTTATTAATCCCATTGGCCCCAATCCCTGGTGGACTGTGATAGCCGCAATTATCCCAGCTCTCCTGTGCACTATCCTGATATTCATGGACCAGCAGATCACCGCTGTCATCATTAACAGGAAGGAACACAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'39-42,'39-39,44-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(10.9=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
ENSMUST00000023776fB3791
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCACGGGGAGTTCATG
R:
TGCACAGGAGAGCTGGGATAA
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types