GgaEX6047092 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE22C19W28_E50C23:844161-845789:-
Coord C1 exon
chrE22C19W28_E50C23:845628-845789
Coord A exon
chrE22C19W28_E50C23:844669-844782
Coord C2 exon
chrE22C19W28_E50C23:844161-844322
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTTGCCCCCCCCAGGTC
3' ss Score
10.14
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAATGTCGACATTTGCATGGAGAATTTCATGGACCTGCCTGTGGACACGATGGCCCCTACACACCCAATGTCCTCTTCTGGTCCTGCATCCTCTTCTTCTCCACATTTGTCCTCTCGAGCTCATTGAAGATGTTTAAAACCAGCCGCTACTTCCCAACCAGA
Seq A exon
GTCCGGTCTACGATAAGTGACTTTGCTGTTTTCCTCACCATCGTCATCATGGTGGTCATTGACTTCCTCATTGGGATCCCATCACCAAAGCTCCACGTCCCCCATATGTTCAAG
Seq C2 exon
CCCACCAGGGATGACCGTGGGTGGCTCATGAACCCCATAGGACCCAACCCATGGTGGACGGTGTTGGCCGCACTCATCCCAGCTCTGCTCTGCACCATCCTGATATTCATGGACCAGCAGATCACTGCCGTCATTGTGAACAGGAAGGAGCACAGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'14-14,'14-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.2=100),PF041238=DUF373=PU(22.2=66.7)
A:
PF0095516=HCO3_cotransp=FE(9.9=100),PF041238=DUF373=FE(22.8=100)
C2:
PF0095516=HCO3_cotransp=FE(14.2=100),PF041238=DUF373=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTCTTCTGGTCCTGCAT
R:
CCTGTGCTCCTTCCTGTTCAC
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]