RnoEX0082882 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142447630-142453540:+
Coord C1 exon
chr7:142447630-142447791
Coord A exon
chr7:142450397-142450510
Coord C2 exon
chr7:142453379-142453540
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGGTTGTTTGCTGCGCCAGGTT
3' ss Score
5.79
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAATGCCAGGAGATGCACGGGGAGTTCATAGGATCGGCCTGTGGTCACCATGGGCCCTACACGCCTGACGTGCTCTTCTGGTCCTGTATTCTGTTCTTCGCTACCTTCATCGTCTCAAGCACCTTGAAGACGTTTAAGACGAGCCGCTACTTCCCAACGAGG
Seq A exon
GTTCGCTCCACGGTGAGTGACTTCGCTGTGTTCCTCACCATCTTTACTATGGTGATCCTAGACTTTCTGATTGGCGTCCCCTCGCCCAAGCTTCAGGTCCCCAGCGTGTTCAAG
Seq C2 exon
CCAACGAGGGATGATCGAGGATGGTTCATTAGTCCCATCGGCCCCAATCCCTGGTGGACCGTGATAGCCGCGATTATCCCAGCTCTCCTGTGCACCATCTTGATATTCATGGACCAGCAGATCACCGCCGTCATCATTAACCGGAAGGAGCACAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(15.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGGGGAGTTCATAGGAT
R:
TGCACAGGAGAGCTGGGATAA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]