DreEX6023493 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40749420-40750240:-
Coord C1 exon
chr6:40750116-40750240
Coord A exon
chr6:40749708-40750016
Coord C2 exon
chr6:40749420-40749623
Length
309 bp
Sequences
Splice sites
3' ss Seq
CACACCATCCTATTTTTCAGGCC
3' ss Score
8.24
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AGGAAATCACAGATTTAACCGAACAGCTTGGCGAGACTGGAAAGACCATCCATGAGCTGGAAAAAGGAAAGAAAACTGCAGAAATCGAAAAATCTGAAATCCAAGCTGCTCTTGAAGAAGCTGAG
Seq A exon
GCCACCTTAGAGCATGAGGAATCCAAGATTCTTCGCGTTCAGCTTGAACTGAACCAAGTGAAAGGAGAGATTGATCGGAAATTGGCCGAGAAGGATGAGGAGATTGAACAGATTAAGCGAAACAGCCAGAGGATCATCGACTCTATGCAGAGCACTCTGGATGCGGAAGTCAGAAGCAGAAACGATGCTCTGAGAATCAAAAAGAAGATGGAAGGAGACCTGAACGAGATGGAGATTCAGCTAAGCCATGCAAACCGGCAGGCAGCTGAAGCTCAGAAGCAGCTCAGGAACGTCCAAGGGCAACTCAAG
Seq C2 exon
GATGCTCAACTCCATCTTGATGAGGCTCTGAGGGCTCAAGAGGACATGAAAGAACAAGTTGCAATGGTTGAACGCAGGAATAACCTGATGCAGGCAGAGATCGAGGAGCTGAGAGTTGCTCTGGAGCAGACCGAGAGAGGCCGCAAAGTGGCTGAGCAGGAACTGGTGGATGCCAGTGAGCGAGTGACTCTCTTACACTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.626 C2=0.574
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.3=100),PF045827=Reo_sigmaC=PD(24.6=81.0)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(12.3=36.9)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCACAGATTTAACCGAACAGC
R:
TGGGAGTGTAAGAGAGTCACTC
Band lengths:
327-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]