GgaEX7009408 @ galGal4
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:301443-304844:-
Coord C1 exon
chr18:304720-304844
Coord A exon
chr18:301734-302042
Coord C2 exon
chr18:301443-301646
Length
309 bp
Sequences
Splice sites
3' ss Seq
TATTATTTCAACACTACCAGGGC
3' ss Score
4.91
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGGAAATTTCTGATCTTACTGAACAGCTTGCTGAAGCTGGAAAAGCTAGTCATGGACTGGAAAAAGCAAAGAAGCAAACTGAGCAAGAAAAATATGACCTTCAAGCAGCATTAGAAGAAGCAGAG
Seq A exon
GGCTCTTTAGAACATGAAGAAGGAAAAATCTTGCGTGTTCAGCTGGAGCTGAACCAAGTGAAGTCAGATGTTGACAGAAGGAGTGCAGAGAAAGATGAGGAAATTCAACAGCTGAAGAAGAATCATCAGCGGGTATTAGAGTCTATGCAAACCACATTGGATGCTGAGATTAGAAGCAGAAACGATGCTTTGAGGCTGAAAAAGAAGATGGAGGGAGATCTGAATGACATGGAGATACAGCTGAGCCGTGCCAACTGTCAGGTAGCAGAGACACAGAAGCACCTCAAAGTCGTGCAAGGGCAACTCAAG
Seq C2 exon
GATTCCCAGCTCCATTTGGATGATGCTTTGAGAGAGAATGATGATCTGAAGGAGCAGCTTGCTGTGATAGAGCGTAGGAATAATCTGATGATGACAGAACTTGAGCAGATGCGAGCTGCCCTTGAGCAAACAGAGCGAGCCCGCAAAGTTTCTGAGCAGGAGCTGACAGATGCCAGTGAGCGAGTGCAGATTCTCCATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'32-33,'32-32,33-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATTTCTGATCTTACTGAACAGC
R:
TGAGAATGGAGAATCTGCACTCG
Band lengths:
327-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]