DreEX6096854 @ danRer10

Exon Skipping

Gene

ENSDARG00000102414 | wu:fd14a01

Description

wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]

Coordinates

chr22:282333-285154:-

Coord C1 exon

chr22:285030-285154

Coord A exon

chr22:284556-284864

Coord C2 exon

chr22:282333-282536

Length

309 bp

Sequences

Splice sites

3' ss Seq

TGCTTTATTTTCTCCTGTAGGGC

3' ss Score

11.43

5' ss Seq

AAGGTGTTT

5' ss Score

2.06

Exon sequences

Seq C1 exon

AGGAGATTTCTGACCTCACTGAGCAGCTTGGAGAGACTGGAAAGAGCATTCATGAGTTAGAGAAAGCCAAGAAGACTGTGGAGTCTGAGAAAGTAGAGATCCAGACTGCACTTGAAGAAGCCGAG

Seq A exon

GGCACCCTGGAGCATGAGGAGTCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGGTGAAGAGTGAGATTGACAGGAAGCTTGCTGAGAAGGATGAAGAGATAGAACAGATCAAGAGGAACAGCCAAAGAGTGCTTGATGCCATGCAGAGCACTCTGGACTCTGAGGTCAGGAGCAGAAATGATGCCCTGAGAGTCAAAAAGAAGATGGAGGGAGATCTGAATGAGATGGAGATCCAGCTGAGTCATGCCAATCGCCAGGCTGCTGAAGCCCAGAAACAGCTCAGGAACGTTCAAGGCCAACTCAAG

Seq C2 exon

GATGCCCAACTGCACCTTGATGAAGCCGTCAGAGGACAAGAGGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGGAATAACCTGATGCAAGCAGAGATTGAGGAGCTGAGAGCCGCACTGGAGCAAACAGAGAGAGGCCGCAAAGTAGCAGAGCAGGAGCTGGTGGATGCCAGTGAGCGTGTGGGACTGCTGCACTCACAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000102414-'32-37,'32-36,33-37=AN

Average complexity

A_S

Mappability confidence:

100%=75=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.881 A=0.728 C2=0.794

Domain overlap (PFAM):

C1:

PF135141=AAA_27=FE(5.5=100),PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.5=100),PF045827=Reo_sigmaC=FE(25.8=100)

A:

PF135141=AAA_27=PD(4.3=31.1),PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.5=31.1),PF045827=Reo_sigmaC=PD(1.3=1.9),PF104734=CENP-F_leu_zip=PU(25.2=35.0)

C2:

PF0157614=Myosin_tail_1=FE(7.8=100),PF104734=CENP-F_leu_zip=FE(46.9=100)

Main Inclusion Isoform:

ENSDARP00000088845