BtaEX6087150 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29963216-29964721:-
Coord C1 exon
chr19:29964597-29964721
Coord A exon
chr19:29963501-29963809
Coord C2 exon
chr19:29963216-29963419
Length
309 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTTGCTTTTATCAGGGT
3' ss Score
9.43
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGAGATTTCCGACTTAACCATGCAGATTGCGGAAACAAACAAGAATCTTCAGGAAGTGGAGAAGACCAAGAAGCAGGCGGAGCAAGAAAAGTCAGACCTCCAGGCTGCCCTAGAAGAGGTGGAG
Seq A exon
GGTTCCTTGGAGCATGAAGAGAGCAAGATCTTGCGTGTCCAGCTAGAGCTGAACCAGGTGAAATCCGAACTCGACCGCAGGCTCACTGAGAAGGATGAAGAAATCGAGCAGCTGAAAAGAAGCAGTCAGCGGGCGGCGGAGGCCATGCAGAGCATACTGGATGCTGAGATCCGGAGCAGGAATGATGCTCTGAGGCTGAAGAAGAAGATGGAGGGAGACCTCAACGAGATGGAGATTCAGCTGGGCCACTCCAACCGCCAGATGGCTGAGACCCAGAAACACCTGCGCTCAGTCCAGGGCCAGCTCAAG
Seq C2 exon
GACTCCCAGCTACACCTGGATGATGCCCTGAGGAGCAACGAGGATCTCAAGGAGCAGCTGGCCATGGTGGAGCGCAGGAACGGCCTCTTGCAGGAGGAGCTGGAGGAGATGAAGGTGGCCTTGGAGCAGACGGAGCGGACCCGCAAGCTGTCGGAGCAGGAGCTGCTGGATGCCAGTGACCGCATGCAGCTTCTTCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'30-31,'30-30,31-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.699 C2=0.824
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.1=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.3=31.1)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTTCCGACTTAACCATGCA
R:
TGGGAGTGAAGAAGCTGCATG
Band lengths:
327-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]