HsaEX6020987 @ hg38
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10309234-10311227:-
Coord C1 exon
chr17:10311103-10311227
Coord A exon
chr17:10309522-10309830
Coord C2 exon
chr17:10309234-10309437
Length
309 bp
Sequences
Splice sites
3' ss Seq
CACTCCTTTGCTTTCGTCAGGGT
3' ss Score
6.15
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGAGATTTCCGACTTAACTGAGCAGATTGCAGAAACTGGCAAGAATCTTCAGGAAGCGGAAAAGACCAAGAAGCTAGTGGAGCAGGAAAAGTCAGATCTGCAGGTCGCCTTAGAAGAAGTGGAG
Seq A exon
GGTTCCTTGGAACACGAGGAGAGCAAGATCTTGCGCGTGCAGCTAGAGCTGAGCCAGGTGAAATCCGAGCTAGACCGCAAGGTCATTGAGAAGGATGAAGAAATCGAGCAGCTAAAAAGAAACAGCCAGCGGGCAGCAGAGGCCCTGCAGAGCGTGCTGGATGCTGAAATCCGCAGCCGGAACGACGCCCTGAGGCTAAAGAAGAAGATGGAGGGAGACCTTAATGAGATGGAGATTCAGCTGGGCCACTCCAACCGCCAGATGGCAGAGACCCAGAAGCATCTGCGCACGGTCCAGGGCCAGCTCAAG
Seq C2 exon
GACTCCCAGCTGCATCTCGATGACGCCCTGAGGAGCAATGAGGACCTCAAGGAGCAGCTGGCCATCGTGGAGCGCAGGAATGGCCTCCTGCTGGAGGAGCTGGAGGAAATGAAGGTGGCCCTGGAACAGACGGAGCGGACCCGCAGGCTGTCAGAGCAGGAGCTGCTGGACGCCAGCGACCGCGTGCAGCTCCTGCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=0.437 C2=0.471
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCCGACTTAACTGAGCAGA
R:
CTGGGAGTGCAGGAGCTG
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains