MmuEX6086292 @ mm10
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67363187-67365055:+
Coord C1 exon
chr11:67363187-67363311
Coord A exon
chr11:67364462-67364770
Coord C2 exon
chr11:67364852-67365055
Length
309 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTCCTTTGTTCTTAGGGT
3' ss Score
10.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGAGATTTCTGACTTAACAGAGCAGATTGCAGAAACGGGCAAAAACCTCCAGGAAGTGGAAAAGACAAAGAAGCAAGTGGAGCAGGAGAAATCTGACCTCCAGGCTGCCTTGGAAGAGGTGGAG
Seq A exon
GGTTCCCTGGAACACGAGGAGAGCAAGATCTTGCGAGTCCAGCTAGAGTTAAGCCAGGTAAAATCTGAGCTTGATCGCAAGGTCACAGAAAAGGATGAGGAAATCGAACAAATAAAAAGAAACAGCCAGCGTGCTGTGGAGGCCATGCAAAGTGTGTTAGATGCAGAAATCCGAAGCCGCAATGACGCCCTGAGACTGAAGAAGAAGATGGAGGGTGATCTCAACGAGATGGAGATTCAGCTGAGCCATGCCAACCGCCAGGTGGCAGAGACCCAGAAACACTTGCGCACGGTCCAAGGCCAGCTTAAG
Seq C2 exon
GATTCCCAGCTGCACCTGGACGATGCCCAGAGAAGTAACGAGGACCTCAAGGAGCAGCTAGCCATTGTGGAGCGCAGGAATGGCCTCCTGCAGGAGGAGCTGGAGGAAATGAAGGTGGCCCTGGAGCAGACAGAGCGGACCCGCAGGCTGTCAGAGCAGGAGCTGCTGGACTCCAGTGACCGTGTCCAGCTGCTCCATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'32-40,'32-36,34-40=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.612 C2=0.650
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATTTCTGACTTAACAGAGCA
R:
GGAATGGAGCAGCTGGACAC
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types