HsaEX6020987 @ hg19
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10212551-10214544:-
Coord C1 exon
chr17:10214420-10214544
Coord A exon
chr17:10212839-10213147
Coord C2 exon
chr17:10212551-10212754
Length
309 bp
Sequences
Splice sites
3' ss Seq
CACTCCTTTGCTTTCGTCAGGGT
3' ss Score
6.15
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGAGATTTCCGACTTAACTGAGCAGATTGCAGAAACTGGCAAGAATCTTCAGGAAGCGGAAAAGACCAAGAAGCTAGTGGAGCAGGAAAAGTCAGATCTGCAGGTCGCCTTAGAAGAAGTGGAG
Seq A exon
GGTTCCTTGGAACACGAGGAGAGCAAGATCTTGCGCGTGCAGCTAGAGCTGAGCCAGGTGAAATCCGAGCTAGACCGCAAGGTCATTGAGAAGGATGAAGAAATCGAGCAGCTAAAAAGAAACAGCCAGCGGGCAGCAGAGGCCCTGCAGAGCGTGCTGGATGCTGAAATCCGCAGCCGGAACGACGCCCTGAGGCTAAAGAAGAAGATGGAGGGAGACCTTAATGAGATGGAGATTCAGCTGGGCCACTCCAACCGCCAGATGGCAGAGACCCAGAAGCATCTGCGCACGGTCCAGGGCCAGCTCAAG
Seq C2 exon
GACTCCCAGCTGCATCTCGATGACGCCCTGAGGAGCAATGAGGACCTCAAGGAGCAGCTGGCCATCGTGGAGCGCAGGAATGGCCTCCTGCTGGAGGAGCTGGAGGAAATGAAGGTGGCCCTGGAACAGACGGAGCGGACCCGCAGGCTGTCAGAGCAGGAGCTGCTGGACGCCAGCGACCGCGTGCAGCTCCTGCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=0.437 C2=0.471
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(24.6=83.3)
A:
PF0157614=Myosin_tail_1=FE(11.9=100)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCCGACTTAACTGAGCAGA
R:
CTGGGAGTGCAGGAGCTG
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)