DreEX6024305 @ danRer10
Exon Skipping
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52227488-52228114:-
Coord C1 exon
chr6:52227957-52228114
Coord A exon
chr6:52227733-52227880
Coord C2 exon
chr6:52227488-52227614
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTCAGCCATTTCATTTCAAGCAC
3' ss Score
4.73
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGACCAAGGCTTTGACAGAAATGGATGGACCATCATGGCGAGAGAAACTGCCCCCGATTCCTACCGTTCCAATGTCCGTAAAGGAAAAGTTAGGACAAGCCGCCAGTCCAGCCTCCAGCTCACAACAGAACAACGTGATCGACGACAAGAAAAAAG
Seq A exon
CACCAGGACCAGACGCTGTTAAAAAGGGCAGAACTTTAAAGGAAGAAGGCAACGCACTTGTGAAGAAGGGGGAACACAAGAAAGCCATGGAGAAGTACACACAGTCACTTGCTCAAGACCCCACAGAAGTCACAACCTACACAAACAG
Seq C2 exon
AGCTCTCTGCTATCTAGCCTTAAAGATGTACAAAGATGCGATTAGGGACTGCGAGGAGGCTCTTCGATTGGATTCTGCCAACATTAAAGCCCTTTACAGACGTGCCCAGGCATACAAGGAACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557-'8-6,'8-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.740 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(61.8=84.0)
C2:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACCATCATGGCGAGAGA
R:
GAGTTCCTTGTATGCCTGGGC
Band lengths:
256-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]