GgaEX6022848 @ galGal3
Exon Skipping
Gene
ENSGALG00000004110 | TOMM34
Description
NA
Coordinates
chr20:5190432-5191677:+
Coord C1 exon
chr20:5190432-5190592
Coord A exon
chr20:5190815-5190959
Coord C2 exon
chr20:5191551-5191677
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGCACTGCTTCCAGCCC
3' ss Score
6.71
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATGACCAAAGCTCTGCTGGAGAAGCACGGGGTGAACTGGCGTGAGAAGCTCCCACCCATCCCCACGGTCCCCATTGATGCCCAGAGGAGATGGAGCGTTCCTTCTGCAGGATCCCCCACAGGAGGTGCTCCCCCTGGAAACACACCACGGGGAGACCCAG
Seq A exon
CCCAGACTGCTGCTGGCATAGAGAGAGCTCAAACTCTTAAGGAAGAAGGAAACAAACTCGTAAAGAAAGGAAACCATAAGAAGGCAATTGAGAAGTACAGTGAGAGTTTAAAGCTGAACCAGGAATGTGCAACTTACACCAACAG
Seq C2 exon
AGCTCTCTGTTACTTGACTCTGAAGCAACACAAGGAAGCAGTCCAGGACTGCACAGAAGCTCTGCGATTAGATCCTAAAAACGTTAAGGCGTTCTACAGACGTGCTCAGGCACTTAAAGAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110-'3-8,'3-5,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.527 A=0.449 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
PF0051523=TPR_1=WD(100=69.4),PF134141=TPR_11=PU(11.8=16.3)
C2:
PF134141=TPR_11=FE(61.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACTGGCGTGAGAAGCTC
R:
TGCCTGAGCACGTCTGTAGAA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]