MmuEX0048477 @ mm9
Exon Skipping
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:163880437-163886744:-
Coord C1 exon
chr2:163886575-163886744
Coord A exon
chr2:163884402-163884549
Coord C2 exon
chr2:163880437-163880563
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGAATTTGTGTCTAGTGC
3' ss Score
6
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
AATAACCAGAGCTCTCATGGACTCCCTGGGACCTGAGTGGCGCCTGAAGCTGCCCCCTATCCCTGTGGTGCCTGTTTCAGCCCAGAAGAGATGGAATTCCTTGCCTTCAGATAACCACAAAGAGACAGCTAAAACCAAATCCAAAGAAGCCACAGCTACGAAGAGCAGAG
Seq A exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAAAGCTCTGAAGGAAGAAGGCAATGACCTTGTAAAGAAGGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAGAGCCTCTTGTGTAGTAGCCTGGAGTCTGCCACATACAGCAACAG
Seq C2 exon
AGCGCTCTGTCACCTGGTCCTGAAGCAGTACAAGGAGGCAGTAAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.448 A=0.380 C2=0.000
Domain overlap (PFAM):
C1:
PF0499812=RNA_pol_Rpb1_5=PU(20.9=56.9)
A:
PF134141=TPR_11=PU(61.8=84.0),PF0499812=RNA_pol_Rpb1_5=FE(31.0=100)
C2:
PF134141=TPR_11=PD(36.8=58.1),PF0499812=RNA_pol_Rpb1_5=FE(26.6=100),PF148531=Fis1_TPR_C=PU(27.1=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGCTCTCATGGACTCC
R:
TCTTCCCATCCAGCTTGAGGG
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types