RnoEX0092725 @ rn6
Exon Skipping
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160449428-160455546:-
Coord C1 exon
chr3:160455377-160455546
Coord A exon
chr3:160452963-160453110
Coord C2 exon
chr3:160449428-160449554
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGAATTTGTGTCTAGTGC
3' ss Score
6
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
AATAACCAGAGCTCTCATGGACTCCCTTGGACCTGAGTGGCGCCTCAAGCTGCCCCCTATCCCTGTGGTGCCTGTGTCAGCCCAGAAGAGATGGAGTTCCTTGCCTTCGGAGAACCACAAAGAGACAGCTAAAAGCAAATCCAAAGAAACCACAGCTACGAAGAACAGAG
Seq A exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAAGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTTTAGTAGCCTGGAATCTGCCACATACAGCAACAG
Seq C2 exon
AGCGCTATGTCATCTGGTCCTGAAGCAGTACAAGGAGGCAGAGAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCCTTTTACAGACGCGCTCAAGCCTACAAGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=0.340 C2=0.000
Domain overlap (PFAM):
C1:
PF0499812=RNA_pol_Rpb1_5=PU(21.4=58.6)
A:
PF0499812=RNA_pol_Rpb1_5=FE(30.8=100),PF134141=TPR_11=PU(61.8=84.0)
C2:
PF0499812=RNA_pol_Rpb1_5=FE(26.4=100),PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGCTCTCATGGACTCC
R:
TCTTCCCATCCAGCTTGAGGG
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]