DreEX6024399 @ danRer10
Exon Skipping
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53412344-53418403:-
Coord C1 exon
chr6:53418283-53418403
Coord A exon
chr6:53416851-53416969
Coord C2 exon
chr6:53412344-53412515
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGGGTGTTTTTTGTAACCAGATA
3' ss Score
7.05
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
AGGTGTGCATCACTTGTAATGGTGAAGACTACAGAGGGCAAGTGGATCACACTGTCAGCGGAAAAGAGTGTCAGAGATGGGACCAACAGTTTCCACATCAACACATCTACCAGCCGGAGAA
Seq A exon
ATATCCGGATAAAAGTTTGGATGATAATTATTGTCGCAACCCGGATGCGTCTCCGGTGCCCTGGTGTTACACCACTGACCCAACAATGGAGAGAGAGAGCTGTGATATAAGCAAGTGCC
Seq C2 exon
CTGAATTTCCCAAGCGTCGTCTTCGCTCCAGCTACACCACTAACTGCTTTCGGGGGCGAGGCGAGGATTACAGGGGCAAAGTCAACGAAACAACCTCTGGAATCCCTTGTCAGCGTTGGGATGCCCAGAAACCTCACGAACACCCATTTTTCCCTAAAACCTACGAGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=72.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGACTACAGAGGGCA
R:
GTTCGTGAGGTTTCTGGGCAT
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]