MmuEX6068822 @ mm9
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:107984332-107984991:+
Coord C1 exon
chr9:107984332-107984452
Coord A exon
chr9:107984534-107984652
Coord C2 exon
chr9:107984823-107984991
Length
119 bp
Sequences
Splice sites
3' ss Seq
AGTCTTGTTACTGCTTTCAGGTT
3' ss Score
6.82
5' ss Seq
GCGGTAGGC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTGTTTGTGTTCTGTGCAACGGTGAGGATTACCGTGGCGAGGTAGACGTTACAGAGTCAGGGCGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCTGAAAA
Seq A exon
GTTCCTAGACAAAGATCTGAAAGACAACTATTGTCGTAATCCGGACGGATCTGAGCGGCCCTGGTGCTACACCACAGACCCGAATGTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCG
Seq C2 exon
GATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'5-8,'5-6,7-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.037 C2=0.152
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(53.2=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGTGAGGATTACCGTGG
R:
GTGCTGGTGTGGACTCTGC
Band lengths:
245-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: