GgaEX6009828 @ galGal3
Exon Skipping
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2307618-2308185:+
Coord C1 exon
chr12:2307618-2307738
Coord A exon
chr12:2307814-2307932
Coord C2 exon
chr12:2308023-2308185
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCACCTCTCACCCAGGTA
3' ss Score
8.53
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CCGTCTGCATGACCTGCAATGGGGAGGATTACCGGGGCTTTGTGGACCACACCGAGTCGGGGACCGAGTGCCAGCGCTGGGACCTGCAGCACCCACACAAGCATCCCTACCACCCCGACAA
Seq A exon
GTACCCCGAGAAGGGTCTGGATGACAACTATTGCCGCAACCCGGACAGCTCTGAGCGGCCCTGGTGCTACACCACTGACCCGGCGCTGGAACGCGAGTTCTGTCGCATCCGTGTCTGCA
Seq C2 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAAGTACCCCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'5-7,'5-5,6-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=95.1)
C2:
PF0005113=Kringle=PU(73.7=76.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATTACCGGGGCTTTGTG
R:
GGTACTTGCTGGGCACGAAG
Band lengths:
254-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]