RnoEX6037594 @ rn6
Exon Skipping
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859237-116859908:+
Coord C1 exon
chr8:116859237-116859357
Coord A exon
chr8:116859445-116859632
Coord C2 exon
chr8:116859713-116859908
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGTCTTGTTACTGCTCCCAGGTT
3' ss Score
4.89
5' ss Seq
GAGGTACTA
5' ss Score
6.36
Exon sequences
Seq C1 exon
CGGTTTGTGTTTGGTGCAACGGCGAGGATTACCGTGGCGAGGTAGACGTTACAGAATCGGGACGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCACCCTGAAAA
Seq A exon
GTTCCCAGACAAAGCTCTGAAAGACAACTATTGCCGTAATCCGGATGCATCTGAGCGGCCCTGGTGCTACACCACGGACCCGAATGTTGAGCGAGAGTTCTGTGACCTGCCCAGTTGCGGTATGCTGCAGGGACAGGGCCTCGGAGGGAACTTGGAAAAAACTGGCAGGCGTGGTTCAACTAGGAGAG
Seq C2 exon
GGCCCAACCTGCCACCGACCACCAAAGGATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-'10-8,'10-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.344 C2=0.470
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
PF0005113=Kringle=PD(50.0=60.9)
C2:
PF0005113=Kringle=PU(53.2=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGTGTTTGGTGCAACGG
R:
CCGCAGAGGTGGTATTGGTTG
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]