DreEX6025011 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1796394-1797965:+
Coord C1 exon
chr2:1796394-1796498
Coord A exon
chr2:1797530-1797625
Coord C2 exon
chr2:1797840-1797965
Length
96 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTCTGGTTTTTGCAGGCT
3' ss Score
9.52
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAACTGATGAGTGATCTGGAGGAGAAGGAGAAAGAGCTGAATAAGCTAAAGGCAAAGGTGGACATGCTGCTGAAGAACCAGCACCCGGCATCTGATAAGATAGAG
Seq A exon
GCTTACATGGACACACTGCAAACCCAGTGGAGCTGGTTACTGCAGATCACCAAGTGCATCCATGTTCACCTGAAGGAGAACGCAGCCTACAGCCAG
Seq C2 exon
TTCTTCAAGGAGGCCAATGAGACGTACAGCAGACTGCAGAAAGACCATGAAAACATCCGGAAGAAGTTCGGCTGCGACAAAACCACACCTCTGGAGAACCTCAACGACATGCTGAAAAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(23.8=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCAAAGGTGGACATGCT
R:
GCATGTCGTTGAGGTTCTCCA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]