RnoEX6053427 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27306646-27308673:-
Coord C1 exon
chr17:27308569-27308673
Coord A exon
chr17:27307734-27307829
Coord C2 exon
chr17:27306646-27306771
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGACGTTTTCTTGTTTCAGGCA
3' ss Score
9.66
5' ss Seq
CAGGTTTTT
5' ss Score
2.93
Exon sequences
Seq C1 exon
ATCCGCATGAGTCAACTGGAAGTCAAGGAAAAGGAGCTCAACAAGCTTAAACAAGAAAGTGACCAACTTGTCCTCAATCAGCATCCAGCGTCAGACAAAATCGAG
Seq A exon
GCATATATGGATACTCTTCAGACACAGTGGAGTTGGATTCTGCAAATCACCAAGTGCATCGATGTCCACCTCAAAGAAAATGCTGCCTACTTTCAG
Seq C2 exon
TTTTTTGAAGAGGCCCAGTCAACTGAAGCCTACCTGAAGGGACTGCAGGACTCCATCAGGAAGAAATACCCCTGTGACAAGAACATGCCCCTCCAGCACCTGCTGGAGCAGATCAAAGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'3-19,'3-8,12-19=AN
Average complexity
A_C3
Mappability confidence:
96%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGATTTCCTCACCTCTTGA
R:
TGAATCTGCTGTGCCTTCTGC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]