GgaEX6020310 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64630347-64632357:-
Coord C1 exon
chr2:64632253-64632357
Coord A exon
chr2:64631020-64631115
Coord C2 exon
chr2:64630347-64630472
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTATTGTTTGTTTTCTTAGGCC
3' ss Score
8.57
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAACGTATGAGTGAACTGGAGCTTAAAGAAAAAGAACTCAACAAGCTAAAGCAAGAAAGTGACCAGCTTGTGCTCAACCAGCACCCTGCTTCAGACAAAATTGAG
Seq A exon
GCCTACATGGATACACTACAAACTCAGTGGAGCTGGATTCTTCAGATCACGAAGTGCATTGATGTTCATTTGAAAGAGAATGCAGCTTACTTTCAG
Seq C2 exon
TTCTTTGAGGAGGCCCAAGCTACAGAGAGCTATCTGAAGAATTTACAGGACTCCATCAGAAAGAAGTTCATATGTGATAAGAGCATGTCACTTCAGAGCTTGCTGGAGCAGATCAAAGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000020869fB6983
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAAAGTGACCAGCTTGT
R:
AGCTCTTTGATCTGCTCCAGC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]