HsaEX6045700 @ hg38
Exon Skipping
Gene
ENSG00000096696 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr6:7566377-7567906:+
Coord C1 exon
chr6:7566377-7566481
Coord A exon
chr6:7567354-7567449
Coord C2 exon
chr6:7567781-7567906
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGACATTTTCTTGTTTCAGGCC
3' ss Score
10.23
5' ss Seq
CAGGTTTTT
5' ss Score
2.93
Exon sequences
Seq C1 exon
ATACGCATGAGTCAACTGGAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAGTGACCAACTTGTCCTCAATCAGCATCCAGCTTCAGACAAAATTGAG
Seq A exon
GCCTATATGGACACTCTGCAGACGCAGTGGAGTTGGATTCTTCAGATCACCAAGTGCATTGATGTTCATCTGAAAGAAAATGCTGCCTACTTTCAG
Seq C2 exon
TTTTTTGAAGAGGCGCAGTCTACTGAAGCATACCTGAAGGGGCTCCAGGACTCCATCAGGAAGAAGTACCCCTGCGACAAGAACATGCCCCTGCAGCACCTGCTGGAACAGATCAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096696-'16-10,'16-9,19-10
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATGAGTCAACTGGAAGT
R:
CGCAGGGGTACTTCTTCCTGA
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains