DreEX6025639 @ danRer10
Exon Skipping
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8940995-8944108:+
Coord C1 exon
chr2:8940995-8941397
Coord A exon
chr2:8943766-8943897
Coord C2 exon
chr2:8943996-8944108
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTTTCTTTGTTTAGATT
3' ss Score
9.92
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GACTCTCAGGAATTCCTGCGTTGTTTGATGGACCAACTCCACGAGGAGCTCAAGGAGCTCATTCCTGAACCCGAGGACCCAAATCAGGCTGTGGCCATGGACGACAGTCCCGACGAGGACAACCACAGCCAATCAGATGACTTCCAGTCCTGCGAGTCTTGCGGCAGCAGTGATCGTGCTGATAACGAAGGCCCCAGAGTCCCAGAAGACATCAACGAAGCTGAGATGCTGATGCCTGAACAGAATCAAAACAACCGAGATTGGCAGAAAGAGAAGAATCTCATCAACAACCTGTACCGTGCCGGTTCCCATGGCGACCTGGATAAAGACGTGGACACGACTAGTGATTCAAGGCCAATCATCAGCAGCCAAGGAGCAATCAAAGCTCAGGGGCGAACTTCAG
Seq A exon
ATTCTGAAATCCAGGTCAGCAGTACTGTCAGACCGCAGAGTCCCACTGGAAATGAGGGCATCACATCTAGACTGTCCAGCAGCCCCCCAAAATCCTCAGCATGGCCAAACCTGAGCTCTACTCACAAGAAAG
Seq C2 exon
TACCCATGTTCACCCCAACAAAGACCAAGCGGCAGAGGAAATACCACAGCATCATTTCTGAAGTGTTTGATGGCACAATTGTCAGCTCAGTTCAGTGCCTAACCTGTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=1.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(26.1=100)
A:
PF0044324=UCH=FE(8.6=100)
C2:
PF0044324=UCH=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGAGTCCCAGAAGACAT
R:
GCTTGGTCTTTGTTGGGGTGA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]