BtaEX0039362 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67192835-67197063:+
Coord C1 exon
chr3:67192835-67193252
Coord A exon
chr3:67195650-67195790
Coord C2 exon
chr3:67196948-67197063
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACAAATTTTAAATATTACAGAAT
3' ss Score
5.12
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GATGCTCAAGAATTCCTTCGATGTTTAATGGATCTGCTTCATGAAGAATTGAAAGAACAAGTCATGGAAGTAGAAGAGGATCCTCAAACTATAATGACTGAAGAGACCATGGAGGAAGACAAGAGCCAGTCAGATGTAGATTTTCAGTCCTGCGAATCTTGTAGCAGCAGTGATAAAGCTGAAAATGAAAATGGCTCTAGAAGCTTTTCTGAAGATAATAATGAGACAACAATGTTAATTCAGGATGATGAGAACAATTCAGAAATGTCAAAAGATTGGCAAAAAGAGAAGATGTGCAACAAGATTAATAAAGTACATTCTGAAGGAGAATTAGATAAAGATAGAGACTCTGTATCTGAAACAGCTGATTTGAACAACCAGGAAACTGTCAAAGTGCAAATACACAGCAGAGCTTCAG
Seq A exon
AATATATTACTGATGTCCATTTGAATGACCTGTCTACACCACAGATCCTCCCATCAAATGAAGGTGTTAATCCAAGATTATCAGCAAGCCCTCCTAAATCAGGCAATTTGTGGCCAGGATTGCCACCCACACACAAAAAAG
Seq C2 exon
TTCAATCTGCATTATCTCCAAAGAGAAAAAAACAGCACAAGAAATACCGAAGTGTTATTTCAGACATATTTGATGGAACAATCATTAGTTCAGTTCAGTGTCTGACTTGTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.875 C2=0.231
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(26.2=100)
A:
PF0044324=UCH=FE(8.9=100)
C2:
PF0044324=UCH=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAAAGAGAAGATGTGCA
R:
CCTGTCACAAGTCAGACACTGA
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development