GgaEX6044535 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17898233-17900107:+
Coord C1 exon
chr8:17898233-17898653
Coord A exon
chr8:17899060-17899200
Coord C2 exon
chr8:17899995-17900107
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATGCAAATCTGTATTGCAGAGT
3' ss Score
6.26
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGCACAAGAGTTTTTGCGTTGCCTAATGGATTTGCTTCATGAAGAACTTAAAGAGCCCATTGTAGAAGTGGAAGATGCACAGACTATGAGTGTTGAAGAGAGTATGGAAGTAGACAAGAGCCAGTCAGATGTAGGCTTTCAGCCGTGTGAATCCTGTGGTACCTGTGATAAAATAGAAAATGATGCTGTTTTCAAACCTGTCTTGGAGGATCCTGCAGAGACAACCATGTTAATTCAGGATGATGAGAACAACTCAATCACATCCAAAGACTGGCAGAAAGAAAAAATATCAAGCAACAAACTTAACAGAGCAAATTCTATGGAAGATTTGGAAAAAGATACAAACAGTACTTCAGAAGCAAATGAATTTTTAAATAATCAAGGAACTGTCAAAGTACAGATACACAGCAGATTCTCAG
Seq A exon
AGTACATCAATGATGTCCACATGAATGATGTATCTGGAGCCCAAACCCTGTCATCAAATGAAGGGACGAACACACGCTTGTCAAGCAGTCCTCCAAAATCATGTACATCATGCTCTTCATCGACACCAATCCACAAAAAAG
Seq C2 exon
TCTCAACTGTATCATCACCAAAAAGGAAGAAGTGCAAGAAGTACAGGAGTGTTATCTCTGATATATTTGATGGGACCATAATAAGTTCAGTACAGTGCTTAACTTGTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'21-29,'21-27,22-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(26.8=100)
A:
PF0044324=UCH=FE(9.0=100)
C2:
PF0044324=UCH=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCCTGCAGAGACAACCA
R:
TGCACTTCTTCCTTTTTGGTGA
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]