RnoEX0097236 @ rn6
Exon Skipping
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257578758-257584515:+
Coord C1 exon
chr2:257578758-257579175
Coord A exon
chr2:257580784-257580924
Coord C2 exon
chr2:257584403-257584515
Length
141 bp
Sequences
Splice sites
3' ss Seq
TAAAAATTTAAATATTACAGAAT
3' ss Score
5.05
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GATGCCCAGGAATTCCTTCGCTGTTTAATGGATCTGCTTCATGAAGAGTTGAAGGAGCAGGTCATGGAAATAGAGGAAGAGCCTCAAGCACTAACTTCTGAGGAGACAGTGGAGGAAGAGAAGAGCCAGTCAGATGTGGATTTTCAGTCCTGCGAGTCATGTAGCAGCAGCAGTGAGAAAGGGGAAAATGAGAGTGTCTCTAAGGGCGGCCCTGAAGACAGCACTGAGACCACCATGCTCATTCAGGATGAGGAGGACCTAGAGATGGCCAAAGACTGGCAAAAAGAGAAGATGTGCAACAAGAGCAACAAAGCAGATTCTGACGGAGAACCGGATAAAGACAGAGACACGGTGTGTGAAACAGTTGACCTAAACAGCCAGGAGACCGTCAAGGTGCAGATACACGGCAGAGCCTCAG
Seq A exon
AATATATCACTGATGTCCATTTGAATGACCTATCTACACCACAGATCCTTCCATCAAATGAAAGTGTTAATCCACGTTTATCAGCAAGTCCTCCTAAGTCAGGCAATCTGTGGCCAGGATTGACACCTCCACACAAGAAAG
Seq C2 exon
CTCAGTCTTCATCTCCAAAGAGGAAAAAGCAGCATAAGAAGTACAGAAGTGTCATCTCTGACATATTTGATGGGACAATCATTAGTTCAGTACAGTGTCTGACGTGTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-'13-18,'13-15,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.917 C2=0.289
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(26.3=100)
A:
PF0044324=UCH=FE(8.9=100)
C2:
PF0044324=UCH=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGACAGCACTGAGACC
R:
TGCTGCTTTTTCCTCTTTGGA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]