MmuEX6074773 @ mm10
Exon Skipping
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152368236-152373498:+
Coord C1 exon
chr3:152368236-152368650
Coord A exon
chr3:152370277-152370417
Coord C2 exon
chr3:152373386-152373498
Length
141 bp
Sequences
Splice sites
3' ss Seq
TAAACATTTAAATTTTACAGAAT
3' ss Score
6.78
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATGCCCAGGAATTCCTTCGCTGTCTAATGGACCTGCTTCATGAGGAGCTGAAGGAGCAGGTCATGGAAATGGAGGAAGAGCCTCAAACACTAACTTCTGAGGAGACGGTGGAGGAAGAGAAGAGCCAGTCAGATGTGGATTTTCAGTCGTGCGAGTCTTGTAGCAGCAGCGAGAAAGCAGAAAATGAGAGTGGCTCCAAAGGCTTTCCTGAGGACAGCAATGAGACCACCATGCTCATCCAGGACGAGGATGACCTGGAGATGGCCAAAGACTGGCAGAAAGAGAAGGTGTGCAATAAGATCAACAAGGCAAATGCCGATGTAGAACTGGACAAAGACAGGGACACAGTGTGTGAAACAGTTGACCTAAACAGCCAGGAGACCGTCAAAGTGCAGATACACGGCAGAGCCTCAG
Seq A exon
AATCTATCACTGATGTCCATCTGAATGACCTAGCTACGTCACAGATCCTTCCTTCAAATGAAAGTGTTAGTCCACGGTTATCAGCAAGCCCTCCTAAGCTAGGCAGTCTGTGGCCAGGACTGTCGCCTCCACACAAGAAAG
Seq C2 exon
CTCAGTCTACATCTGCAAAGAGGAAAAAGCAGCATAAGAAATACAGAAGTGTCATCTCCGACATATTCGATGGAACAGTCATTAGCTCGGTACAGTGTCTGACGTGCGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-'24-34,'24-32,26-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.629 A=0.771 C2=0.211
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(26.6=100)
A:
PF0044324=UCH=FE(9.1=100)
C2:
PF0044324=UCH=FE(7.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAAGAGAAGGTGTGCA
R:
CCTATCGCACGTCAGACACTG
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types