DreEX6026143 @ danRer10
Exon Skipping
Gene
ENSDARG00000009014 | col11a1b
Description
collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
Coordinates
chr2:15793433-15795283:-
Coord C1 exon
chr2:15795239-15795283
Coord A exon
chr2:15793675-15793728
Coord C2 exon
chr2:15793433-15793540
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGAGTTTGACTGATTTCAGGGT
3' ss Score
4.83
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGTGCTGAAGGCGTCCGAGGTCTGAAAGGAGGCAAAGGCGAGAAG
Seq A exon
GGTGAAGATGGTTTCCCTGGGTTCAAGGGAGACATGGGCCTCAAGGGTGACAAG
Seq C2 exon
GGAGAAGTCGGTGTGATCGGTCCCAGAGGAGAAGATGGACCTGAGGGGCCAAAGGGTAAATCAGGTCCAAGCGGAGAGGCCGGTCCAATGGGCACAGCAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009014-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100)
A:
PF0139113=Collagen=FE(28.3=100),PF0139113=Collagen=PU(8.6=44.4)
C2:
PF0139113=Collagen=PD(13.3=22.2),PF0139113=Collagen=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGAAAGGAGGCAAAGGC
R:
TTCTCTCCTGCTGTGCCCATT
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]