DreEX6028683 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42793743-42795223:-
Coord C1 exon
chr2:42795157-42795223
Coord A exon
chr2:42794974-42795066
Coord C2 exon
chr2:42793743-42793811
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTTCTCTGCAGAAG
3' ss Score
11.84
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
AGAAGGGCTGGTCTGGGATGATGTTAACTGGATGGACAATGGAGAATGCCTGGATCTGATAGAGAAG
Seq A exon
AAGTTGGGTTTGCTCGCTCTTGTGAATGAGGAAAGTCATTTTCCTAAAGGCACTGATGGCACACTTCTAGAGAAACTCCACAGCCAACATTCT
Seq C2 exon
AGAAATCAGTTCTACATCAAACCTCGAGTTGCAGTTCATCAGTTTGGAATCAAGCACTACGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'18-14,'18-13,19-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=FE(4.5=100)
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCTGGTCTGGGATGAT
R:
GCGTAGTGCTTGATTCCAAACTG
Band lengths:
128-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]