MmuEX6052940 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25736595-25738025:+
Coord C1 exon
chr15:25736595-25736661
Coord A exon
chr15:25737450-25737542
Coord C2 exon
chr15:25737957-25738025
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCGTTTTCTCTTCCCTGTAGAAA
3' ss Score
11.61
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAGGGATTGGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGTCTAGACCTGATCGAGAAG
Seq A exon
AAACTTGGCCTCCTCGCCTTGATCAATGAAGAGAGCCATTTTCCTCAAGCCACAGACAGCACTTTGTTGGAGAAGCTACACAGTCAGCATGCT
Seq C2 exon
AATAACCACTTTTATGTGAAACCCCGCGTTGCAGTCAACAATTTTGGCGTGAAGCATTATGCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'25-28,'25-24,29-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=FE(4.5=100)
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGATTGGTGTGGGAAGA
R:
TCTCCTGCATAATGCTTCACGC
Band lengths:
135-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types