GgaEX1037951 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75573541-75576479:+
Coord C1 exon
chr2:75573541-75573607
Coord A exon
chr2:75575589-75575681
Coord C2 exon
chr2:75576411-75576479
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGTCTGTTCTAGAAA
3' ss Score
12.73
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
GGAAGGTCTGGTTTGGGAGGATATTGACTGGACAGACAATGGCGAATGCTTGGATCTTATTGAAAAG
Seq A exon
AAACTTGGCCTGCTGGCACTCATCAATGAAGAAAGCCATTTCCCTCAGGCTACTGACTCCACTTTACTGGAGAAGCTGAATGCCCAGCATGCT
Seq C2 exon
AACAATCCTTTTTATGTAAAACCACGAGTTGCTGTTCACAACTTTGGAGTGAAGCACTATGCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'29-25,'29-24,30-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=FE(4.5=100)
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGTCTGGTTTGGGAGGA
R:
GCATAGTGCTTCACTCCAAAGT
Band lengths:
129-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]