DreEX6020795 @ danRer10
Exon Skipping
Gene
ENSDARG00000074723 | myo10l1
Description
myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
Coordinates
chr6:10905284-10906149:-
Coord C1 exon
chr6:10905663-10906149
Coord A exon
chr6:10905437-10905529
Coord C2 exon
chr6:10905284-10905352
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTATATGTTTTTTATGCAGAAA
3' ss Score
7.91
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCAATCGATTCCCGGGATTCGGTTGCCATGGCGCTTTATTCTCAGTGCTTCTCGTGGATCATAATGCGGATTAATCAGAAAATAAAGGGCAAAGATAACTTCAAGTCTATAGGAATCCTGGACATCTTTGGCTTTGAGAACTTTGAGGTGCGTCTACAGAGATCACCTGTTCATTCACACACATTATGTGTTTATCGAGCGTTAATTCAAGTGTTTATGTGCTCTGAAGGTCAACCGTTTTGAGCAGTTCAACATTAATTACGCCAATGAGAAACTTCAAGAATATTTCAACAAACACATCTTCTCTTTGGAGCAACTGGAGTACAACAGGTAAACCCATGTGATCTTAACATGCATACTGTATCTCCTAAGAGTTACCTAAACATTTTAAAAGAATGAACAATGAGTTGTGTTGTGCAGGGAAGGAATTCATTGGGAAGCCATTGACTGGATGGACAATGCAGAATGTCTGGATCTGATCGAGAAG
Seq A exon
AAATTGGGCATGTTAGCTTTGGTTAATGAGGAGAGCAGATTTCCCAAAGGCACTGACTTCACCTTGCTGGAGAAACTACACGGCAGACACTCT
Seq C2 exon
ACTAATCCATACTATGTGAAACCCAGACTGGCAGACCATCAGTTTGGGATAAAACATTACGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074723-'13-16,'13-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.5=91.7)
A:
PF0006316=Myosin_head=FE(12.2=100)
C2:
PF0006316=Myosin_head=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCATACTGTATCTCCTAAGAGT
R:
GTCTGCCAGTCTGGGTTTCAC
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]