BtaEX6075922 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56461539-56462708:+
Coord C1 exon
chr20:56461539-56461605
Coord A exon
chr20:56462126-56462218
Coord C2 exon
chr20:56462640-56462708
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCTCTCTTCTAGAAA
3' ss Score
11.65
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
AGAAGGCTTAGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGCCTGGACTTGATTGAGAAG
Seq A exon
AAACTTGGTCTCCTAGCCCTTATCAATGAAGAAAGCCATTTTCCTCAAGCCACTGATAGCACCTTATTGGAAAAGTTGCACAATCAGCATGCT
Seq C2 exon
AATAACCACTTTTACGTGAAGCCTAGAGTTGCAGTCAACAATTTTGGAGTGAAACACTATGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'29-25,'29-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=FE(4.5=100)
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCTTAGTGTGGGAAGA
R:
TCTCCAGCATAGTGTTTCACTCC
Band lengths:
135-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]