HsaEX6097483 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16761464-16763547:-
Coord C1 exon
chr5:16763481-16763547
Coord A exon
chr5:16762545-16762637
Coord C2 exon
chr5:16761464-16761546
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTCTTCTTCTAGAAA
3' ss Score
11.42
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGAAGGATTAGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGCCTGGACTTGATTGAGAAG
Seq A exon
AAACTTGGCCTCCTAGCCCTTATCAATGAAGAAAGCCATTTTCCTCAAGCCACAGACAGCACCTTATTGGAGAAGCTACACAGTCAGCATGCG
Seq C2 exon
GTGCAATATGATGTCCGAGGTATCTTGGAGAAGAACAGAGATACATTTCGAGATGACCTTCTCAATTTGCTAAGAGAAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_MULTIEX3-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=FE(4.5=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGATTAGTGTGGGAAGAT
R:
CGGCTTTCTCTTAGCAAATTGAGA
Band lengths:
150-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains