DreEX6029762 @ danRer10
Exon Skipping
Gene
ENSDARG00000016304 | tfdp1b
Description
transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
Coordinates
chr1:241030-241986:+
Coord C1 exon
chr1:241030-241195
Coord A exon
chr1:241637-241783
Coord C2 exon
chr1:241918-241986
Length
147 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTGTGTGTCCTGCAGCAC
3' ss Score
8.47
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCACTGCAGGAGGGCTGATAAGAGCGGGAAGGGTTTGCGTCATTTCTCTATGAAGGTGTGTGAGAAGGTGCAGAAGAAGGTGGTGACGTCCTACAATGAGGTGGCAGACGAGCTGGTGCAGGAGTTCAGCTCTGCAGACCACAGCAGCATCTCCCCCAATGATGCG
Seq A exon
CACGTGTACGACCAGAAGAACATCCGGCGGCGGGTTTACGACGCCCTCAACGTCCTCATGGCCATGAACATCATCTCCAAAGACAAGAAGGAGATCAAGTGGATTGGCTTTCCCACCAACTCAGCGCAGGAGTGTGAGGATCTGAAG
Seq C2 exon
GCTGAGCGTCAGAGGCGACAGGAGAGAATCAAGCAGAAGCAGTCTCAGCTGCAGGAGCTCATTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016304-'17-15,'17-14,22-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.117 C2=0.435
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(58.4=86.7)
A:
PF0231915=E2F_TDP=PD(39.3=71.4),PF087815=DP=PU(4.1=12.2)
C2:
PF087815=DP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAGGAGGGCTGATAAG
R:
CTGCACAATGAGCTCCTGCAG
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]