BtaEX6057620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90749803-90750791:+
Coord C1 exon
chr12:90749803-90749968
Coord A exon
chr12:90750230-90750373
Coord C2 exon
chr12:90750723-90750791
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACCCCCCGCGTCTCTGCCAGGCC
3' ss Score
8.82
5' ss Seq
GAGGTGCCC
5' ss Score
4.12
Exon sequences
Seq C1 exon
GAAGCGCAACCGGAAAGGAGAGAAGAACGGGAAGGGGCTGCGGCACTTCTCCATGAAGGTGTGCGAGAAGGTGCAGCGCAAAGGGACCACGTCCTACAACGAGGTGGCCGACGAGCTGGTGGCTGAGTTCAGCGCAGCCGACAGCCACATCCTGCCCAGTGAGTCG
Seq A exon
GCCTACGATCAGAAGAACATCCGGAGGCGTGTGTACGACGCGCTGAACGTGCTCATGGCGATGAACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATCGGCTTGCCCACCAACTCCGCCCAGGAGTGCCAGAGCCTGGAG
Seq C2 exon
GTGGAGAGACAGAGAAGGCTGGAAAGAATAAAACAGAAACAGTCACAGCTTCAGGAGCTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.6=83.9)
A:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.2=12.5)
C2:
PF087815=DP=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAACCGGAAAGGAGAGAAG
R:
TCCTGAAGCTGTGACTGTTTCTG
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]