GgaEX6005340 @ galGal3
Exon Skipping
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141544522-141546278:-
Coord C1 exon
chr1:141546113-141546278
Coord A exon
chr1:141545786-141545929
Coord C2 exon
chr1:141544522-141544590
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGCACTATGTCTACAGCAGGCT
3' ss Score
2.96
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAAGCGGAACAGAAAAGGAGAGAAGAGCGGCACGGGTTTACGTCATTTCTCTATGAAGGTTTGTGAGAAGGTACAAAGGAAAGGAACCACCTCATACAATGAGGTGGCAGACGAGTTGGTTGCAGAATTCACTACCCCTGACGATCACATTTCACCAAATGAATCA
Seq A exon
GCTTACGACCAGAAGAATATTAGACGACGTGTCTATGATGCCTTAAATGTCCTCATGGCCATGAACATTATCTCTAAGGAGAAGAAAGAAATCAAATGGATTGGTCTACCTACAAACTCGGCTCAGGAATGTCAGAATTTAGAG
Seq C2 exon
GTGGAGAAACAGAGAAGACTAGAAAGAATAAAGCAAAAACAATCTCAACTACAAGAACTCATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.6=83.9)
A:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.1=12.5)
C2:
PF087815=DP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGGAACAGAAAAGGAGAGA
R:
TGTAGAATGAGTTCTTGTAGTTGAGA
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]