Special

MmuEX1025847 @ mm10

Exon Skipping

Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13370481-13371420:+
Coord C1 exon
chr8:13370481-13370646
Coord A exon
chr8:13370879-13371078
Coord C2 exon
chr8:13371352-13371420
Length
200 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGCTCTGTCGTCTAGGCT
3' ss Score
6.48
5' ss Seq
CAGGTGGCT
5' ss Score
2.97
Exon sequences
Seq C1 exon
GAAGCGGAACAGGAAGGGCGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAGGAAAGGAACCACCTCCTACAATGAGGTGGCTGACGAGCTGGTGGCAGAGTTCAGCGCTGCCGACAACCACATTCTACCAAACGAATCA
Seq A exon
GCTTATGACCAGAAGAACATCCGGCGGCGTGTCTACGATGCCTTAAATGTGCTAATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGATCAAATGGATCGGCCTGCCCACCAACTCAGCTCAGGAGTGCCAGAACTTAGAGGTGCACTGCCTAAGCAGGCGTCCATTGTCCTTGGTCACTTGAGAGAGCTATACCAG
Seq C2 exon
GTAGAGAGGCAGAGGAGGCTGGAGAGGATCAAACAGAAGCAGTCACAGCTCCAGGAGCTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.386 A=0.045 C2=0.109
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF118163=DUF3337=FE(32.7=100),PF0231915=E2F_TDP=PU(51.6=83.9),PF087815=DP=PU(4.3=7.1)

							
A:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.1=12.5)

							
C2:
PF118163=DUF3337=FE(13.1=100),PF0231915=E2F_TDP=FE(24.2=100),PF087815=DP=FE(23.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUST00000209945fB18114





     
                   









    
Main Skipping Isoform:
ENSMUSP00000147601





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000127952, ENSMUSP00000147345, ENSMUSP00000147662, ENSMUSP00000147881
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr13:113633890-113634063 
Human
(hg19)
chr13:114288205-114288378 
Rat
(rn6)
chr8:104154689-104154689 
Cow
(bosTau6)
chr12:90750230-90750373 
HIGH PSI
BtaEX6057620
(TFDP1)
Chicken
(galGal4)
chr1:136654992-136655135 
HIGH PSI
GgaEX6005340
([1])
Chicken
(galGal3)
chr1:141545786-141545929 
HIGH PSI
GgaEX6005340
(F1P3E8_CHICK)
Zebrafish
(danRer10)
chr1:241643-241797 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAAGCGGAACAGGAAGGGC

				
R: 
CTGGAGCTGTGACTGCTTCTG

				
Band lengths: 
220-420

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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