GgaEX6005340 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136653728-136655484:-
Coord C1 exon
chr1:136655319-136655484
Coord A exon
chr1:136654992-136655135
Coord C2 exon
chr1:136653728-136653796
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGCACTATGTCTACAGCAGGCT
3' ss Score
2.96
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAAGCGGAACAGAAAAGGAGAGAAGAGCGGCACGGGTTTACGTCATTTCTCTATGAAGGTTTGTGAGAAGGTACAAAGGAAAGGAACCACCTCATACAATGAGGTGGCAGACGAGTTGGTTGCAGAATTCACTACCCCTGACGATCACATTTCACCAAATGAATCA
Seq A exon
GCTTACGACCAGAAGAATATTAGACGACGTGTCTATGATGCCTTAAATGTCCTCATGGCCATGAACATTATCTCTAAGGAGAAGAAAGAAATCAAATGGATTGGTCTACCTACAAACTCGGCTCAGGAATGTCAGAATTTAGAG
Seq C2 exon
GTGGAGAAACAGAGAAGACTAGAAAGAATAAAGCAAAAACAATCTCAACTACAAGAACTCATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'13-18,'13-16,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.6=83.9)
A:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.1=12.5)
C2:
PF087815=DP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGGAACAGAAAAGGAGAGA
R:
TGTAGAATGAGTTCTTGTAGTTGAGA
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]