DreEX6037339 @ danRer10
Exon Skipping
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35153135-35153784:+
Coord C1 exon
chr9:35153135-35153300
Coord A exon
chr9:35153447-35153593
Coord C2 exon
chr9:35153716-35153784
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTCTGCTTTTTTCAGCAT
3' ss Score
8.37
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
AAAAAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTTTCCATGAAGGTTTGCGAGAAGGTCCAGCGGAAGGGTGTCACAACTTACAACGAGGTTGCTGATGAGCTTGTGGCCGAGTTCAGCTCTGGTGATAATCATATCTCTCCTAATGATGCG
Seq A exon
CATGTGTATGACCAGAAGAACATTCGACGGCGTGTGTACGATGCTCTCAATGTGCTGATGGCCATGAACATAATTTCCAAAGAGAAAAAGGAGATCAAATGGATTGGTCTGCCCACAAACTCTGCTCAGGAGTGCCAGAACCTGGAG
Seq C2 exon
GTGGAGAGGCAAAGACGTTTGGAGAGAATCAAACAAAAACAGTCACAACTTCAAGAACTTATATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293-'11-11,'11-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.0=83.9)
A:
PF0231915=E2F_TDP=PD(41.7=71.4),PF087815=DP=PU(20.0=12.2)
C2:
PF087815=DP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGGGTAAGAAGGGGGAGA
R:
AAGTTCTTGAAGTTGTGACTGTTT
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]