DreEX6031345 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21512174-21518694:+
Coord C1 exon
chr1:21512174-21512262
Coord A exon
chr1:21512899-21513045
Coord C2 exon
chr1:21518556-21518694
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTAATGTGATGGCAGGTT
3' ss Score
3.57
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
ACACCGTTATCCACGAGGACTTCAGACTGTTCCTCAGCTCCATGCCTACAAATGTTTTTCCTGTCACTGTGTTACAAAACTCTGTCAAG
Seq A exon
GTTACTAACGAGCCCCCAAAGGGTCTCCGTGCCAATGTGAGACGCGCCTTCACTGAGATCAGCAGCACATTCTTTGAGGAACACATCCTTGGCAGGAAATGGAGAAAGATCATTTTTGGAGTGTGCTTCTTCCACGCCATCATTCAG
Seq C2 exon
GAGCGGAAGAAGTTTGGTCCTCTGGGCTGGAACATCCGTTACGAATTCAATGACAGCGACAGAGAGTGTGCTCTGCTCAACCTAAACCTCTACTGCCAGACAGGACATATACCTTGGGATGCTCTTACATACATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'71-75,'71-74,72-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.8=100)
A:
PF0302810=Dynein_heavy=FE(6.4=100)
C2:
PF0302810=Dynein_heavy=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGAGGACTTCAGACTGT
R:
TGTGATGTATGTAAGAGCATCCCA
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]