MmuEX6004963 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73035288-73038830:-
Coord C1 exon
chr6:73038742-73038830
Coord A exon
chr6:73037545-73037691
Coord C2 exon
chr6:73035288-73035426
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATGCTGTTTCTATATCCAGGTA
3' ss Score
9.57
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATCAGACAATCAAGGACACTTTCCGGCTTTTTCTAAGCTCCATGCCTTGTTCCACATTTCCTGTGACAGTCCTTCAGAATTCTGTCAAG
Seq A exon
GTAACCAATGAGCCTCCAAAAGGCTTGCGTGCAAATATCAGGCGAGCCTTTACTGAAATGACACCTTCGTTTTTTGAAGAAAACATACTTGGAATGAAATGGAGAAAACTAATATTCGGCATTTGTTTCTTCCACGCAATTATTCAG
Seq C2 exon
GAGAGAAAGAAGTTTGGCCCCCTTGGCTGGAATATCTGCTATGAATTTAATGACAGTGATAGAGAATGTGCCTTACTGAACCTCAACCTTTACTGTCACGAAGGAAAGATCCCCTGGGACGCGCTAATTTACATTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'79-81,'79-80,80-81
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.9=100)
A:
PF0302810=Dynein_heavy=FE(6.4=100)
C2:
PF0302810=Dynein_heavy=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACAATCAAGGACACTTTCC
R:
AGTAATGTAAATTAGCGCGTCCCA
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types