HsaEX6014156 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:85011846-85014426:+
Coord C1 exon
chr2:85011846-85011934
Coord A exon
chr2:85012734-85012880
Coord C2 exon
chr2:85014288-85014426
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATATTCTATCTAAATCCAGGTG
3' ss Score
7.74
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATAGTGCTATCAAGGACACTTTTCGACTTTTTTTAAGCTCCATGCCTAGTAATACATTTCCTGTTACAGTTCTTCAAAATTCTGTCAAG
Seq A exon
GTGACCAATGAGCCTCCAAAAGGCTTACGTGCAAATATCAGACGAGCATTTACTGAAATGACACCTTCGTTTTTTGAAGAAAATATACTTGGAAAAAAATGGAGACAAATAATATTTGGCATTTGTTTCTTCCATGCAATTATTCAG
Seq C2 exon
GAGAGAAAGAAGTTTGGCCCCCTTGGTTGGAATATCTGCTATGAATTTAATGACAGTGACAGGGAATGTGCTTTACTGAATCTCAAACTCTATTGTAAAGAAGGAAAGATTCCCTGGGATGCACTAATTTACATTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'70-69,'70-68,71-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.8=100)
A:
PF0302810=Dynein_heavy=FE(6.4=100)
C2:
PF0302810=Dynein_heavy=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATCAAGGACACTTTTCGA
R:
CAGTAATGTAAATTAGTGCATCCCA
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)