HsaEX6014156 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84784722-84787302:+
Coord C1 exon
chr2:84784722-84784810
Coord A exon
chr2:84785610-84785756
Coord C2 exon
chr2:84787164-84787302
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATATTCTATCTAAATCCAGGTG
3' ss Score
7.74
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATAGTGCTATCAAGGACACTTTTCGACTTTTTTTAAGCTCCATGCCTAGTAATACATTTCCTGTTACAGTTCTTCAAAATTCTGTCAAG
Seq A exon
GTGACCAATGAGCCTCCAAAAGGCTTACGTGCAAATATCAGACGAGCATTTACTGAAATGACACCTTCGTTTTTTGAAGAAAATATACTTGGAAAAAAATGGAGACAAATAATATTTGGCATTTGTTTCTTCCATGCAATTATTCAG
Seq C2 exon
GAGAGAAAGAAGTTTGGCCCCCTTGGTTGGAATATCTGCTATGAATTTAATGACAGTGACAGGGAATGTGCTTTACTGAATCTCAAACTCTATTGTAAAGAAGGAAAGATTCCCTGGGATGCACTAATTTACATTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'88-91,'88-90,89-91
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.8=100)
A:
PF0302810=Dynein_heavy=FE(11.2=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATCAAGGACACTTTTCGA
R:
CAGTAATGTAAATTAGTGCATCCCA
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains