DreEX6031351 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21489152-21496918:+
Coord C1 exon
chr1:21489152-21489332
Coord A exon
chr1:21494219-21494398
Coord C2 exon
chr1:21496685-21496918
Length
180 bp
Sequences
Splice sites
3' ss Seq
TAACAATTTCTCCTATGCAGGTG
3' ss Score
9.51
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGATGTAGTCCGTCTGGAGCGTCCTGACTTGGAAGAACAGAGAAGCCAGCTGATAGTCCGCATAAACGCAGACCGAAACCAACTGAAAGCCATTGAGGACCGAATCCTCAAACTGCTCTTCACTTCTGAGGGAAACATACTGGACAATGAGGAGCTTGTACAAACCTTACAAGAGTCAAAG
Seq A exon
GTGACATCTCAGGCCATTAAGTCTCGGCTGGTGGAGGCGGAGACGACAGAGGAGATGATCAACAGAGCTAGAGAGAAGTATCGCCCTGTTGCCACACGTGGCTCCATCATGTACTTTGTCATTGCCAGCCTGTCTGAGATTGACCCCATGTATCAGTTCTCACTAAAGTACTTTAAACAG
Seq C2 exon
TTATTCAACAATACTATTGAATCAGCAGAGAAGCACAAAGATCTGAGCCTGAGATTGCAGATCCTGTTGGATCAGACTCTTCTGAGTGCCTACACGAATGTATCCCGTGGCCTTTTTGAGCAGCACAAGGCCATCTACAGCTTCATGCTGTGCGTGGAGATCATGATGCAGCGTGGAGAGATCTCTCAGCAGGAGTGGCTATACTTCCTGAGAGGGGCTGGAGGCATAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'64-66,'64-65,65-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(2.6=10.0)
C2:
PF0302810=Dynein_heavy=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCAGACCGAAACCAACT
R:
CTTGTGCTGCTCAAAAAGGCC
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]