HsaEX6014162 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84945328-84955026:+
Coord C1 exon
chr2:84945328-84945508
Coord A exon
chr2:84949749-84949928
Coord C2 exon
chr2:84954793-84955026
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTTATTGTATGTTTATTCAGATC
3' ss Score
7.16
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGATGTGGTGCGACTTGAAAAACCCAGGTTGGAAGAACAAAGAATTAAGCTCATCGTGAGGATCAACACTGATAAAAACCAGTTGAAAACTATCGAAGAGAAAATCCTGAGAATGCTCTTTACCTCTGAAGGAAATATTCTGGACAATGAAGAACTTATTGACACACTCCAGGATTCAAAG
Seq A exon
ATCACTTCTGGTGCCATTAAAACCAGGCTGGAAGAAGCAGAGTCCACTGAGCAGATGATCAATGTGGCTCGTGAGAAGTATCGTCCAGTGGCCACTCAAGGCTCTGTAATGTACTTTGTCATTGCAAGCCTCTCAGAAATAGATCCTATGTACCAGTACTCATTAAAATACTTTAAACAG
Seq C2 exon
TTGTTCAATACCACCATTGAAACTTCTGTAAAGACAGAAAATCTACAACAGCGCCTGGACGTACTACTAGAACAAACTCTCCTAACTGCTTATGTCAATGTTTCAAGAGGACTTTTTGAGCAACATAAACTCATCTACAGCTTTATGCTTTGTGTTGAGATGATGCGTCAGCAAGGAACCCTATCTGATGCTGAATGGAATTTCTTTCTCCGAGGTTCTGCAGGATTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'63-62,'63-61,64-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(2.6=10.0)
C2:
PF0302810=Dynein_heavy=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCGACTTGAAAAACCCA
R:
TCTAGTAGTACGTCCAGGCGC
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)