MmuEX6004956 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73060067-73067530:-
Coord C1 exon
chr6:73067350-73067530
Coord A exon
chr6:73065637-73065816
Coord C2 exon
chr6:73060067-73060300
Length
180 bp
Sequences
Splice sites
3' ss Seq
CACGTTGTGTATTTATTCAGATC
3' ss Score
7.86
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGACGTTGTGCGACTTGAAAAGCCTGAGTTGGAGGAACAGAGGATCCAGCTAATCGTGAGGATCAACAGCGATAAAAACCAGCTGAAATCTATCGAAGACAAAATCCTGAAACTGCTCTTTACATCTGAAGGGAATATTCTGGATAACGAAGAACTTATTGATACACTCCAGGACTCAAAG
Seq A exon
ATCACTTCGGGTGCCATTAAAACCAGGCTGAAGGAAGCAGAGTCCACAGAGCTGATGATCAACATAGCTCGAGAGAGGTACCGCCCGGTGGCCACTCAGGGCTCCGTGATGTACTTCGTCATAGCCAGCCTCTCGGAAATCGACCCCATGTATCAGTATTCACTGAAATATTTTAAACAG
Seq C2 exon
TTGTTCAACACAACAATCGAAACATCTGAGAAGAGTGACAACCTGCATGAACGCCTGAAAATCCTCCTGCAGCAGACCCTCCTCACTGCCTACACCAATGTGTCTCGGGGACTCTTCGAGCAGCACAAACTCATCTACAGCTTCATGCTCTGTGTTGACATCATGCGCGAGCATGAGCAGCTAACGGAGGCCGAGTGGAATTTCTTCCTCCGAGGTTCTGCAGGGATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'71-72,'71-71,72-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(2.6=10.0)
C2:
PF0302810=Dynein_heavy=PU(0.1=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGTGCGACTTGAAAAGCC
R:
GCAGGAGGATTTTCAGGCGTT
Band lengths:
248-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types